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* galaxy: It contains the core python scripts of Galaxy. | * galaxy: It contains the core python scripts of Galaxy. | ||
* logs: Contains all log files during server Stop/Start/Run process as well as. The most important file in this directory is <code>galaxy.log</code> that is widely used to diagnose issues during Galaxy run. | * logs: Contains all log files during server Stop/Start/Run process as well as. The most important file in this directory is <code>galaxy.log</code> that is widely used to diagnose issues during Galaxy run. | ||
* plugins: Contains all plugins. In original galaxy package this directory is located | * plugins: Contains all plugins. In original galaxy package this directory is located within <code>galaxy</code> directory. | ||
* tmp: Contains all temporary files that galaxy needs for compiling and installing tool sheds. | |||
* venv: It is a python virtual environment directory and it contains all python package dependencies. | |||
=== Galaxy configuration === | === Galaxy configuration === |