Bureaucrats, cc_docs_admin, cc_staff
2,879
edits
Galaxy: Difference between revisions
Jump to navigation
Jump to search
→Galaxy directory structure
| Line 10: | Line 10: | ||
=== Galaxy directory structure === | === Galaxy directory structure === | ||
Galaxy is usually installed on the project directory of the group and it contains several sub-directories. The name of the Galaxy top directory is determined by taking the first two character of PI username + "glxy". For example if PI username is "davidc" the Galaxy top directory will "daglxy" and it is located in <code>/project/group name/</code> | Galaxy is usually installed on the project directory of the group and it contains several sub-directories. The name of the Galaxy top directory is determined by taking the first two character of PI username + "glxy". For example if PI username is "davidc" the Galaxy top directory will "daglxy" and it is located in <code>/project/group name/</code> where <code>group name</code> is the default group name of PI, eg., <code>def-davidc</code>. Galaxy main directory contains the following sub-directories which is slightly different than the original Galaxy package. | ||
* config: It contains all required configuration files to set up and optimize the Galaxy server. Below we explain some basic concepts of some of configuration files that need to be set up in order to be compatible with our HPC environment, however, we will not cover all concepts. | * config: It contains all required configuration files to set up and optimize the Galaxy server. Below we explain some basic concepts of some of configuration files that need to be set up in order to be compatible with our HPC environment, however, we will not cover all concepts. | ||