Bioinformatics/en: Difference between revisions
Jump to navigation
Jump to search
(Updating to match new version of source page) |
(Updating to match new version of source page) |
||
| Line 20: | Line 20: | ||
{{Command|ls /cvmfs/ref.mugqic/genomes/species}} | {{Command|ls /cvmfs/ref.mugqic/genomes/species}} | ||
=Container Repository= | |||
The Bioinformatics National Team maintains a repository of Apptainer (formerly Singularity) containers which provide common workflows and those requiring preservation. Learn more at the [[Biorepo_Containers]] page. | |||
Revision as of 16:38, 22 March 2023
Software
See Available software for a list of bioinformatics applications on our systems. You can sort on 'Type', where bioinformatics software is categorized as 'bio'.
Some bioinformatics software is available as Python packages, which do not appear on the above list. See Available Python wheels for a list of Python "wheels" customized for Alliance clusters.
Data
Some genome databases are available on our clusters, in /cvmfs/ref.mugqic/genomes.
Examine that directory and its subdirectories, e.g. with
[name@server ~]$ ls /cvmfs/ref.mugqic/genomes
or
[name@server ~]$ ls /cvmfs/ref.mugqic/genomes/species
Container Repository
The Bioinformatics National Team maintains a repository of Apptainer (formerly Singularity) containers which provide common workflows and those requiring preservation. Learn more at the Biorepo_Containers page.