Bioinformatics

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This site replaces the former Compute Canada documentation site, and is now being managed by the Digital Research Alliance of Canada.

Ce site remplace l'ancien site de documentation de Calcul Canada et est maintenant géré par l'Alliance de recherche numérique du Canada.

Other languages:
English • ‎français


Software

See Available software for a list of bioinformatics applications on our systems. You can sort on 'Type', where bioinformatics software is categorized as 'bio'.

Some bioinformatics software is available as Python packages, which do not appear on the above list. See Available Python wheels for a list of Python "wheels" customized for Alliance clusters.

Data

Some genome databases are available on our clusters, in /cvmfs/ref.mugqic/genomes. Examine that directory and its subdirectories, e.g. with

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[name@server ~]$ ls /cvmfs/ref.mugqic/genomes

or

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[name@server ~]$ ls /cvmfs/ref.mugqic/genomes/species