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===Using more resources than asked for === <!--T:30--> | ===Using more resources than asked for === <!--T:30--> | ||
Sometimes GATK/JAVA applications will use more memory or CPUs/threads than the | Sometimes GATK/JAVA applications will use more memory or CPUs/threads than the numbers requested. This is often generated by the JAVA garbage collection. To control this, add <code>-XX:ConcGCThreads=1</code> to the <code>--java-options</code> argument. | ||
===FAQ on GATK === <!--T:31--> | ===FAQ on GATK === <!--T:31--> | ||
You can find GATK | You can find the GATK [https://gatk.broadinstitute.org/hc/en-us/sections/360007226791-Troubleshooting-GATK4-Issues FAQs on their website]. | ||
=References = <!--T:32--> | =References = <!--T:32--> |