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===Using more resources than asked for === <!--T:30-->
===Using more resources than asked for === <!--T:30-->
Sometimes GATK/JAVA applications will use more memory or CPUs/threads than the ones requested. This is often generated by the JAVA garbage collection. To add control for this, you can add <code>-XX:ConcGCThreads=1</code> to the <code>--java-options</code> argument.  
Sometimes GATK/JAVA applications will use more memory or CPUs/threads than the numbers requested. This is often generated by the JAVA garbage collection. To control this, add <code>-XX:ConcGCThreads=1</code> to the <code>--java-options</code> argument.  


===FAQ on GATK === <!--T:31-->
===FAQ on GATK === <!--T:31-->
You can find GATK's [https://gatk.broadinstitute.org/hc/en-us/sections/360007226791-Troubleshooting-GATK4-Issues FAQs on their website].
You can find the GATK [https://gatk.broadinstitute.org/hc/en-us/sections/360007226791-Troubleshooting-GATK4-Issues FAQs on their website].


=References = <!--T:32-->
=References = <!--T:32-->
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