Bioinformatics: Difference between revisions

From Alliance Doc
Jump to navigation Jump to search
(Marked this version for translation)
No edit summary
Line 27: Line 27:
<!--T:15-->
<!--T:15-->
{{Command|ls /cvmfs/ref.mugqic/genomes/species}}
{{Command|ls /cvmfs/ref.mugqic/genomes/species}}
=Container Repository=
The Bioinformatics National Team maintains a repository of Apptainer (formerly Singularity) containers which provide common workflows and those requiring preservation.  Learn more at the [[Biorepo_Containers]] page.


</translate>
</translate>

Revision as of 16:27, 22 March 2023

Other languages:


Software

See Available software for a list of bioinformatics applications on our systems. You can sort on 'Type', where bioinformatics software is categorized as 'bio'.

Some bioinformatics software is available as Python packages, which do not appear on the above list. See Available Python wheels for a list of Python "wheels" customized for Alliance clusters.

Data

Some genome databases are available on our clusters, in /cvmfs/ref.mugqic/genomes. Examine that directory and its subdirectories, e.g. with

Question.png
[name@server ~]$ ls /cvmfs/ref.mugqic/genomes

or

Question.png
[name@server ~]$ ls /cvmfs/ref.mugqic/genomes/species

Container Repository

The Bioinformatics National Team maintains a repository of Apptainer (formerly Singularity) containers which provide common workflows and those requiring preservation. Learn more at the Biorepo_Containers page.