cc_staff
415
edits
GATK: Difference between revisions
→Running GATK via singularity
| Line 122: | Line 122: | ||
A docker image can be found [https://hub.docker.com/r/broadinstitute/gatk here]. There are different versions to explore at this [https://hub.docker.com/r/broadinstitute/gatk/tags page]. You will need first to [[Singularity/en#Creating_an_image_using_Docker_Hub|build singularity image from docker]]. | A docker image can be found [https://hub.docker.com/r/broadinstitute/gatk here]. There are different versions to explore at this [https://hub.docker.com/r/broadinstitute/gatk/tags page]. You will need first to [[Singularity/en#Creating_an_image_using_Docker_Hub|build singularity image from docker]]. | ||
For example, one could run on the cluster: | For example, to get the latest version one could run on the cluster: | ||
<pre> | <pre> | ||
| Line 136: | Line 136: | ||
</pre> | </pre> | ||
for a particular | for a particular [https://hub.docker.com/r/broadinstitute/gatk/tags%20page version]. | ||
==Frequently asked questions == <!--T:23--> | ==Frequently asked questions == <!--T:23--> | ||