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→Running GATK via singularity
| Line 124: | Line 124: | ||
For example, one could run on the cluster: | For example, one could run on the cluster: | ||
< | <pre> | ||
module load singularity | module load singularity | ||
singularity build gatk.sif docker://broadinstitute/gatk | singularity build gatk.sif docker://broadinstitute/gatk | ||
</ | </pre> | ||
or | or | ||
< | <pre> | ||
module load singularity | module load singularity | ||
singularity build gatk_VERSION.sif docker://broadinstitute/gatk:VERSION | singularity build gatk_VERSION.sif docker://broadinstitute/gatk:VERSION | ||
</ | </pre> | ||
for a particular version from the following [https://hub.docker.com/r/broadinstitute/gatk/tags%20page link]. | for a particular version from the following [https://hub.docker.com/r/broadinstitute/gatk/tags%20page link]. | ||