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→Running GATK via singularity
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A docker image can be found [https://hub.docker.com/r/broadinstitute/gatk here]. There are different versions to explore at this [https://hub.docker.com/r/broadinstitute/gatk/tags page]. You will need first to [[Singularity/en#Creating_an_image_using_Docker_Hub|build singularity image from docker]]. | A docker image can be found [https://hub.docker.com/r/broadinstitute/gatk here]. There are different versions to explore at this [https://hub.docker.com/r/broadinstitute/gatk/tags page]. You will need first to [[Singularity/en#Creating_an_image_using_Docker_Hub|build singularity image from docker]]. | ||
For example, one could run on the cluster: | For example, to get the latest version one could run on the cluster: | ||
<pre> | <pre> | ||
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</pre> | </pre> | ||
for a particular | for a particular [https://hub.docker.com/r/broadinstitute/gatk/tags%20page version]. | ||
==Frequently asked questions == <!--T:23--> | ==Frequently asked questions == <!--T:23--> | ||