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add plugin installation instructions
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(add plugin installation instructions)
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defaults write org.macosforge.xquartz.X11 enable_iglx -bool true
defaults write org.macosforge.xquartz.X11 enable_iglx -bool true
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== Installing plugins ==
VMD has many plugins available.  You should be able to install them in your own space.  The example that follows will illustrate how to install the  [https://github.com/HuiLiuCode/CaFE_Plugin CaFE plugin].
The installation instructions are detailed [https://github.com/HuiLiuCode/CaFE_Plugin/blob/master/doc/manual.pdf here].
wget https://github.com/HuiLiuCode/CaFE_Plugin/archive/refs/heads/master.zip
unzip master.zip
cd CaFE_Plugin-master
mv src cafe1.0
mv cafe1.0 ~
cd
Then edit the .vmdrc file with
nano .vmdrc
and add this line:
set auto_path [linsert $auto_path 0 {~/cafe1.0}]
After this load the vmd module and the other modules (namd) which are required, and the CaFE plugin should be available.
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