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VMD: Difference between revisions
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5. Create two new directories to receive the program files: | 5. Create two new directories to receive the program files: | ||
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mkdir ~/vmd_install | mkdir ~/vmd_install | ||
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6. Run <code>configure</code> and <code>make</code>: | 6. Run <code>configure</code> and <code>make</code>: | ||
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./configure | ./configure | ||
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defaults write org.macosforge.xquartz.X11 enable_iglx -bool true | defaults write org.macosforge.xquartz.X11 enable_iglx -bool true | ||
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== Installing plugins == | == Installing plugins == | ||
VMD has many plugins available. You | VMD has many plugins available. You can install them in your own space. | ||
The example that follows illustrates how to install the [https://github.com/HuiLiuCode/CaFE_Plugin CaFE plugin], | |||
from detailed instructions which can be found [https://github.com/HuiLiuCode/CaFE_Plugin/blob/master/doc/manual.pdf here]: | |||
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wget https://github.com/HuiLiuCode/CaFE_Plugin/archive/refs/heads/master.zip | wget https://github.com/HuiLiuCode/CaFE_Plugin/archive/refs/heads/master.zip | ||
unzip master.zip | unzip master.zip | ||
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mv cafe1.0 ~ | mv cafe1.0 ~ | ||
cd | cd | ||
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Edit the <code>.vmdrc</code> file with your favorite editor (<code>nano, vim, emacs</code> etc.) and add this line: | |||
and add this line: | |||
</translate> | |||
set auto_path [linsert $auto_path 0 {~/cafe1.0}] | set auto_path [linsert $auto_path 0 {~/cafe1.0}] | ||
<translate> | |||
After this load the vmd module and | After this, load the <code>vmd</code> module and any other modules which are required, such as <code>namd</code> and the CaFE plugin should be available. | ||
== Links == | == Links == | ||
* WestGrid webinars | * WestGrid webinars (in English) | ||
** [https://www.youtube.com/watch?v=_skmrS6X4Ys Molecular visualization with VMD] | ** [https://www.youtube.com/watch?v=_skmrS6X4Ys Molecular visualization with VMD] | ||
** [https://www.youtube.com/watch?v=Jce5JN2fLuo Intermediate VMD topics - Trajectories, movies, scripting] | ** [https://www.youtube.com/watch?v=Jce5JN2fLuo Intermediate VMD topics - Trajectories, movies, scripting] | ||
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