Apptainer: Difference between revisions

On our clusters, you will want to use a number of additional options (that appear after <code>run</code>, but before <code>your-container-name.sif</code>). These options will include <code>-C</code>, <code>-c</code>, <code>-e</code>, <code>-W</code> as well as various bind mount options to make your disk space available to the programs that run in your container. For example:

apptainer run -C -W $SLURM_TMPDIR -B /home -B /project -B /scratch your-container-name.sif g++ -O2 -march=broadwell ./myprog.cpp

   apptainer run -C -W $SLURM_TMPDIR -B /home -B /project -B /scratch ./a.out