AMBER: Difference between revisions

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#SBATCH --time=1:00:00
#SBATCH --time=1:00:00
module purge
module purge
module load StdEnv/2020 gcc/9.3.0 openmpi/4.0.3 amber/20.9-20.15 scipy-stack
module load module load StdEnv/2023 gcc/12.3 openmpi/4.1.5 amber/22
srun MMPBSA.py.MPI -O -i mmpbsa.in -o mmpbsa.dat -sp solvated_complex.parm7 -cp complex.parm7 -rp receptor.parm7 -lp ligand.parm7 -y trajectory.nc
srun MMPBSA.py.MPI -O -i mmpbsa.in -o mmpbsa.dat -sp solvated_complex.parm7 -cp complex.parm7 -rp receptor.parm7 -lp ligand.parm7 -y trajectory.nc
}}
}}
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