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Biomolecular simulation: Difference between revisions
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→Software Packages: added OpenKIM
(→Software Packages: added links for MM/MD-related modules recently installed) |
(→Software Packages: added OpenKIM) |
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* [http://www.scd.stfc.ac.uk/SCD/44516.aspx DL_POLY] | * [http://www.scd.stfc.ac.uk/SCD/44516.aspx DL_POLY] | ||
* [http://lammps.sandia.gov/ LAMMPS] | * [http://lammps.sandia.gov/ LAMMPS] | ||
* [https://openkim.org/ OpenKIM], the Knowledgebase of Interatomic Models | |||
* [https://simtk.org/home/openmm OpenMM] | * [https://simtk.org/home/openmm OpenMM] | ||
* [http://www.plumed-code.org PLUMED], a library for code development related to the calculation of free energy in molecular dynamics simulations. See also [[GROMACS]]. | * [http://www.plumed-code.org PLUMED], a library for code development related to the calculation of free energy in molecular dynamics simulations. See also [[GROMACS]]. | ||
* [https://www.rosettacommons.org Rosetta] | * [https://www.rosettacommons.org Rosetta] | ||