GBrowse: Difference between revisions

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 where GROUPID is your group id and USERNAME is the your user name. There is a symbolic link from this directory to ${HOME}/gbrowse/conf just for simplicity so that you can get access to files within this directory easier. Files in this directory should be readable for all member of the group therefore, please do not change the group permission of files in this directory.
+==Input Files
+GBrowse is able to read .bam files directly, e.g., you do not need to upload them to the database in order to display them. If you want GBrowse to read these kind files you need to pay attention to following:
+* Files need to be copied to your /project directory and they should be readable for group.
+* the directory that contains files and also all top directories should be readable by the group, e.g., the group mode of the group directories should have SGID bit (Set Group ID up on execution) with small "s" (not capital "S").
+* make sure that your file's group in project directory is set to your group membership and not your username.
+first need to copy them to your "project" directory.
 ===Setup Database===
 GBrowse uses two sources of input, files and database. Before using GBrowse users require to setup their own database. More information about database of computecanada is here.