cc_staff
159
edits
GBrowse: Difference between revisions
Jump to navigation
Jump to search
no edit summary
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
where GROUPID is your group id and USERNAME is the your user name. There is a symbolic link from this directory to ${HOME}/gbrowse/conf just for simplicity so that you can get access to files within this directory easier. Files in this directory should be readable for all member of the group therefore, please do not change the group permission of files in this directory. | where GROUPID is your group id and USERNAME is the your user name. There is a symbolic link from this directory to ${HOME}/gbrowse/conf just for simplicity so that you can get access to files within this directory easier. Files in this directory should be readable for all member of the group therefore, please do not change the group permission of files in this directory. | ||
==Input Files | ===Input Files=== | ||
GBrowse is able to read .bam files directly, e.g., you do not need to upload them to the database in order to display them. If you want GBrowse to read these kind files you need to pay attention to following: | GBrowse is able to read .bam files directly, e.g., you do not need to upload them to the database in order to display them. If you want GBrowse to read these kind files you need to pay attention to following: | ||
* Files need to be copied to your /project directory and they should be readable for group. | * Files need to be copied to your /project directory and they should be readable for group. | ||