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When running a program within a Singularity container, by default, it can only see the files within the container image and the current directory. | When running a program within a Singularity container, by default, it can only see the files within the container image and the current directory. | ||
Realistically your Singularity jobs will need to mount the various filesystems where your files are. | Realistically your Singularity jobs will need to mount the various filesystems where your files are. This is done using the <code>-B</code> option | ||
to the Singularity <code>shell</code>, <code>exec</code>, or <code>run</code> commands, e.g., | to the Singularity <code>shell</code>, <code>exec</code>, or <code>run</code> commands, e.g., | ||