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Modules specific to Niagara: Difference between revisions
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| align="center" | [https://www.continuum.io/anaconda-overview anaconda3] | | align="center" | [https://www.continuum.io/anaconda-overview anaconda3] | ||
| align="center" | 5.1.0 | | align="center" | 5.1.0 5.2.0 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. <br />Homepage: https://www.continuum.io/anaconda-overview </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Built to complement the rich, open source Python community, the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. <br />Homepage: https://www.continuum.io/anaconda-overview </div> | ||
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| align="center" | [http://stnava.github.io/ANTs/ ants] | |||
| align="center" | 2.3.1 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualizing multidimensional data.<br />Homepage: http://stnava.github.io/ANTs/ </div> | |||
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| align="center" | [http://arma.sourceforge.net/ armadillo] | | align="center" | [http://arma.sourceforge.net/ armadillo] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.<br />Homepage: http://arma.sourceforge.net/ </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.<br />Homepage: http://arma.sourceforge.net/ </div> | ||
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| align="center" | arpack-ng | | align="center" | [http://forge.scilab.org/index.php/p/arpack-ng/ arpack-ng] | ||
| align="center" | 3.5.0 | | align="center" | 3.5.0 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.<br />Homepage: http://forge.scilab.org/index.php/p/arpack-ng/ </div> | ||
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| align="center" | aspect | | align="center" | [https://aspect.geodynamics.org/ aspect] | ||
| align="center" | 2.0.0 2.0.1 | | align="center" | 2.0.0 2.0.1 | ||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: An extensible code written in C++ to support research in simulating convection in the Earth mantle and elsewhere.<br />Homepage: https://aspect.geodynamics.org/ </div> | |||
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| align="center" | aspera-client | |||
| align="center" | 3.8.1 | |||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: </div> | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: This bundle collect the standard GNU build tools: Autoconf, Automake and libtool<br />Homepage: http://autotools.io </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: This bundle collect the standard GNU build tools: Autoconf, Automake and libtool<br />Homepage: http://autotools.io </div> | ||
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| align="center" | [http://www.evolution.reading.ac.uk/BayesTraitsV1.html bayestraits] | |||
| align="center" | 3.0.1 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: BayesTraits is a computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available. This new package incoporates our earlier and separate programes Multistate, Discrete and Continuous. BayesTraits can be applied to the analysis of traits that adopt a finite number of discrete states, or to the analysis of continuously varying traits. Hypotheses can be tested about models of evolution, about ancestral states and about correlations among pairs of traits. <br />Homepage: http://www.evolution.reading.ac.uk/BayesTraitsV1.html </div> | |||
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| align="center" | [http://bazel.io/ bazel] | | align="center" | [http://bazel.io/ bazel] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.<br />Homepage: https://code.zmaw.de/projects/cdo </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.<br />Homepage: https://code.zmaw.de/projects/cdo </div> | ||
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| align="center" | [https://uscilab.github.io/cereal cereal] | |||
| align="center" | 1.2.2 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Header-only C++11 serialization library.<br />Homepage: https://uscilab.github.io/cereal </div> | |||
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| align="center" | [http://heasarc.gsfc.nasa.gov/fitsio/ cfitsio] | | align="center" | [http://heasarc.gsfc.nasa.gov/fitsio/ cfitsio] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.<br />Homepage: http://heasarc.gsfc.nasa.gov/fitsio/ </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.<br />Homepage: http://heasarc.gsfc.nasa.gov/fitsio/ </div> | ||
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| align="center" | cmake | | align="center" | [http://chaiscript.com chaiscript] | ||
| align="center" | 6.1.0 | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Easy to use embedded scripting language for C++.<br />Homepage: http://chaiscript.com </div> | |||
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| align="center" | [https://cmake.org cmake] | |||
| align="center" | 3.10.3 3.11.0 3.11.1 | | align="center" | 3.10.3 3.11.0 3.11.1 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: open-source, cross-platform family of tools designed to build, test and package software<br />Homepage: https://cmake.org </div> | ||
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| align="center" | [http://www.cp2k.org/ cp2k] | | align="center" | [http://www.cp2k.org/ cp2k] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. <br />Homepage: http://www.cp2k.org/ </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. <br />Homepage: http://www.cp2k.org/ </div> | ||
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| align="center" | dakota-mpi | | align="center" | [https://dakota.sandia.gov dakota-mpi] | ||
| align="center" | 6.7.0 | | align="center" | 6.7.0 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Toolkit for advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models.<br />Homepage: https://dakota.sandia.gov </div> | ||
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| align="center" | [https://www.arm.com/products/development-tools/hpc-tools/cross-platform/forge ddt] | | align="center" | [https://www.arm.com/products/development-tools/hpc-tools/cross-platform/forge ddt] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Eigenvalue SoLvers for Petaflop-Applications .<br />Homepage: http://elpa.rzg.mpg.de </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Eigenvalue SoLvers for Petaflop-Applications .<br />Homepage: http://elpa.rzg.mpg.de </div> | ||
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| align="center" | fenics | | align="center" | [https://fenicsproject.org fenics] | ||
| align="center" | 2017.2.0 | | align="center" | 2017.2.0 2018.1.0 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Computing platform for solving partial differential equations.<br />Homepage: https://fenicsproject.org </div> | ||
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| align="center" | fetk | | align="center" | [http://www.fetk.org fetk] | ||
| align="center" | 1.5 | | align="center" | 1.5 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Finite Element ToolKit.<br />Homepage: http://www.fetk.org </div> | ||
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| align="center" | [https://www.ffmpeg.org/ ffmpeg] | | align="center" | [https://www.ffmpeg.org/ ffmpeg] | ||
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| align="center" | foam-extend | | align="center" | foam-extend | ||
| align="center" | 4.0 | | align="center" | 4.0 | ||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: </div> | |||
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| align="center" | [http://freesurfer.net/ freesurfer] | |||
| align="center" | 6.0.0 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: FreeSurfer is a software package for the analysis and visualization of structural and functional neuroimaging data from cross-sectional or longitudinal studies. It is developed by the Laboratory for Computational Neuroimaging at the Athinoula A. Martinos Center for Biomedical Imaging.<br />Homepage: http://freesurfer.net/ </div> | |||
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| align="center" | gamess | |||
| align="center" | 14Feb2018 | |||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: </div> | ||
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| align="center" | [http://www.gromacs.org gromacs] | | align="center" | [http://www.gromacs.org gromacs] | ||
| align="center" | 2016.5 2016.5-plumed-2.4.1 | | align="center" | 2016.5 2016.5-plumed-2.4.1 5.1.4 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is CPU only build, containing both MPI and threadMPI builds. <br />Homepage: http://www.gromacs.org </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is CPU only build, containing both MPI and threadMPI builds. <br />Homepage: http://www.gromacs.org </div> | ||
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| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Intel's (MPICH-based) MPI implementation.<br />Homepage: https://software.intel.com/en-us/intel-parallel-studio-xe </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Intel's (MPICH-based) MPI implementation.<br />Homepage: https://software.intel.com/en-us/intel-parallel-studio-xe </div> | ||
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| align="center" | [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ intel-mpi-benchmarks] | |||
| align="center" | 2018.1 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).<br />Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ </div> | |||
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| align="center" | intelpython2 | | align="center" | intelpython2 | ||
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| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.<br />Homepage: http://java.com/ </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.<br />Homepage: http://java.com/ </div> | ||
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| align="center" | [http://julialang.org julia] | |||
| align="center" | 1.0.0 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: A high-level, high-performance dynamic language for technical computing.<br />Homepage: http://julialang.org </div> | |||
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| align="center" | [http://lammps.sandia.gov/ lammps] | | align="center" | [http://lammps.sandia.gov/ lammps] | ||
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| align="center" | [http://ab-initio.mit.edu/libctl libctl] | | align="center" | [http://ab-initio.mit.edu/libctl libctl] | ||
| align="center" | 4.0.1 | | align="center" | 4.0.1 4.1.2 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: libctl is a free Guile-based library implementing flexible control files for scientific simulations.<br />Homepage: http://ab-initio.mit.edu/libctl </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: libctl is a free Guile-based library implementing flexible control files for scientific simulations.<br />Homepage: http://ab-initio.mit.edu/libctl </div> | ||
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| align="center" | [http://libevent.org/ libevent] | |||
| align="center" | 2.1.8 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.<br />Homepage: http://libevent.org/ </div> | |||
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| align="center" | [http://sourceware.org/libffi/ libffi] | | align="center" | [http://sourceware.org/libffi/ libffi] | ||
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| align="center" | [http://ab-initio.mit.edu/wiki/index.php/Meep meep] | | align="center" | [http://ab-initio.mit.edu/wiki/index.php/Meep meep] | ||
| align="center" | 1.4.3 | | align="center" | 1.4.3 1.5.0 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems.<br />Homepage: http://ab-initio.mit.edu/wiki/index.php/Meep </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems.<br />Homepage: http://ab-initio.mit.edu/wiki/index.php/Meep </div> | ||
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| align="center" | [http://ab-initio.mit.edu/wiki/index.php/Meep meep-mpi] | | align="center" | [http://ab-initio.mit.edu/wiki/index.php/Meep meep-mpi] | ||
| align="center" | 1.4.3 | | align="center" | 1.4.3 1.5.0 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems.<br />Homepage: http://ab-initio.mit.edu/wiki/index.php/Meep </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems.<br />Homepage: http://ab-initio.mit.edu/wiki/index.php/Meep </div> | ||
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| align="center" | [http://glaros.dtc.umn.edu/gkhome/metis/metis/overview metis] | | align="center" | [http://glaros.dtc.umn.edu/gkhome/metis/metis/overview metis] | ||
| align="center" | 5.1.0 | | align="center" | 4.0.3 5.1.0 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.<br />Homepage: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.<br />Homepage: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview </div> | ||
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| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.<br />Homepage: http://www.mpfr.org </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.<br />Homepage: http://www.mpfr.org </div> | ||
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| align="center" | [http://graal.ens-lyon.fr/MUMPS/ mumps] | |||
| align="center" | 5.1.2 | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: A parallel sparse direct solver<br />Homepage: http://graal.ens-lyon.fr/MUMPS/ </div> | |||
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| align="center" | [http://www.ncl.ucar.edu ncl] | | align="center" | [http://www.ncl.ucar.edu ncl] | ||
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| align="center" | [http://www.open-mpi.org/ openmpi] | | align="center" | [http://www.open-mpi.org/ openmpi] | ||
| align="center" | 1.10.7 2.1.3 3.0.1 3.0.2 3.1.0 3.1.0rc3 3.1.0rc4 3.1.1 | | align="center" | 1.10.7 2.1.3 2.1.4 3.0.1 3.0.2 3.1.0 3.1.0rc3 3.1.0rc4 3.1.1 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Open MPI Project is an open source MPI-2 implementation.<br />Homepage: http://www.open-mpi.org/ </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Open MPI Project is an open source MPI-2 implementation.<br />Homepage: http://www.open-mpi.org/ </div> | ||
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| align="center" | osu-micro-benchmarks | |||
| align="center" | 5.4.3 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: </div> | |||
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| align="center" | [http://www.paraview.org paraview] | | align="center" | [http://www.paraview.org paraview] | ||
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| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: ParaView is a scientific parallel visualizer.<br />Homepage: http://www.paraview.org </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: ParaView is a scientific parallel visualizer.<br />Homepage: http://www.paraview.org </div> | ||
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| align="center" | [http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview parmetis] | |||
| align="center" | 4.0.3 | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.<br />Homepage: http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview </div> | |||
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| align="center" | perf-reports | | align="center" | perf-reports | ||
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| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. <br />Homepage: </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. <br />Homepage: </div> | ||
|- | |||
| align="center" | [http://qt.io/ qt] | |||
| align="center" | 5.11.1 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Qt is a comprehensive cross-platform C++ application framework.<br />Homepage: http://qt.io/ </div> | |||
|- | |- | ||
| align="center" | quantum-espresso | | align="center" | quantum-espresso | ||
| align="center" | 6.2.1 | | align="center" | 6.2.1 6.3 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: </div> | ||
|- | |- | ||
| align="center" | [http://www.r-project.org/ r] | | align="center" | [http://www.r-project.org/ r] | ||
| align="center" | 1.1.1 3.5.0 4.0.1 R2018a | | align="center" | 1.1.1 3.5.0 4.0.1 6.0.0 R2018a | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: R is a free software environment for statistical computing and graphics.<br />Homepage: http://www.r-project.org/ </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: R is a free software environment for statistical computing and graphics.<br />Homepage: http://www.r-project.org/ </div> | ||
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| align="center" | [https://www.rust-lang.org rust] | | align="center" | [https://www.rust-lang.org rust] | ||
| align="center" | 1.26.1 | | align="center" | 1.26.1 1.28.0 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.<br />Homepage: https://www.rust-lang.org </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.<br />Homepage: https://www.rust-lang.org </div> | ||
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| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: SCons is a software construction tool.<br />Homepage: http://www.scons.org/ </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: SCons is a software construction tool.<br />Homepage: http://www.scons.org/ </div> | ||
|- | |||
| align="center" | [http://gforge.inria.fr/projects/scotch/ scotch] | |||
| align="center" | 6.0.6 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.<br />Homepage: http://gforge.inria.fr/projects/scotch/ </div> | |||
|- | |- | ||
| align="center" | [http://www.shengbte.org/ shengbte] | | align="center" | [http://www.shengbte.org/ shengbte] | ||
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| align="center" | [http://su2.stanford.edu su2] | | align="center" | [http://su2.stanford.edu su2] | ||
| align="center" | 5.0.0 6.0.0 | | align="center" | 5.0.0 6.0.0 6.1.0 | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: An open-source collection of software tools written in C++ for performing Partial Differential Equation (PDE) analysis and solving PDE-constrained optimization problems. The toolset is designed with computational fluid dynamics and aerodynamic shape optimization in mind.<br />Homepage: http://su2.stanford.edu </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: An open-source collection of software tools written in C++ for performing Partial Differential Equation (PDE) analysis and solving PDE-constrained optimization problems. The toolset is designed with computational fluid dynamics and aerodynamic shape optimization in mind.<br />Homepage: http://su2.stanford.edu </div> | ||
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| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages.<br />Homepage: http://trilinos.sandia.gov/ </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages.<br />Homepage: http://trilinos.sandia.gov/ </div> | ||
|- | |||
| align="center" | trinityrnaseq | |||
| align="center" | 2.8.1 | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: <br />Homepage: </div> | |||
|- | |- | ||
| align="center" | [http://valgrind.org valgrind] | | align="center" | [http://valgrind.org valgrind] | ||