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VMD: Difference between revisions
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<translate> | <translate> | ||
== Using pre-installed VMD == | == Using pre-installed VMD == <!--T:1--> | ||
<!--T:2--> | |||
When connected via VNC or <code>ssh -X/-Y</code>, the commands | When connected via VNC or <code>ssh -X/-Y</code>, the commands | ||
<!--T:3--> | |||
{{Commands | {{Commands | ||
|module load vmd | |module load vmd | ||
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}} | }} | ||
<!--T:4--> | |||
: will open VMD graphical windows. | : will open VMD graphical windows. | ||
== Instructions for installing version 1.9.4 Alpha == | == Instructions for installing version 1.9.4 Alpha == <!--T:5--> | ||
<!--T:6--> | |||
1. Download the 1.9.4 LATEST ALPHA tar file from [http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD http://www.ks.uiuc.edu/], selecting the LINUX_64 version (free registration is required). | 1. Download the 1.9.4 LATEST ALPHA tar file from [http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD http://www.ks.uiuc.edu/], selecting the LINUX_64 version (free registration is required). | ||
<!--T:7--> | |||
2. Copy the file to the home directory of the cluster you wish to use. | 2. Copy the file to the home directory of the cluster you wish to use. | ||
<!--T:8--> | |||
3. Unpack the file with: | 3. Unpack the file with: | ||
tar xvf vmd-1.9.4*.opengl.tar.gz | <!--T:9--> | ||
tar xvf vmd-1.9.4*.opengl.tar.gz | |||
<!--T:10--> | |||
4. Enter the created directory by: | 4. Enter the created directory by: | ||
cd vmd-1.9.4* | <!--T:11--> | ||
cd vmd-1.9.4* | |||
<!--T:12--> | |||
5. | 5. | ||
mkdir ~/vmd_install | mkdir ~/vmd_install | ||
mkdir ~/vmd_library | mkdir ~/vmd_library | ||
<!--T:13--> | |||
6. edit the ''configure'' file to read | 6. edit the ''configure'' file to read | ||
# Directory where VMD startup script is installed, should be in users' paths. | <!--T:14--> | ||
# Directory where VMD startup script is installed, should be in users' paths. | |||
$install_bin_dir="/home/your_user_name/vmd_install"; | $install_bin_dir="/home/your_user_name/vmd_install"; | ||
# Directory where VMD files and executables are installed | <!--T:15--> | ||
# Directory where VMD files and executables are installed | |||
$install_library_dir="/home/your_user_name/vmd_library"; | $install_library_dir="/home/your_user_name/vmd_library"; | ||
<!--T:16--> | |||
but replace your_user_name with your actual user name. | but replace your_user_name with your actual user name. | ||
<!--T:17--> | |||
7. Run configure: | 7. Run configure: | ||
./configure | ./configure | ||
<!--T:18--> | |||
8. Run make | 8. Run make | ||
cd src | cd src | ||
make install | make install | ||
<!--T:19--> | |||
9. Add the resulting executable to your path | 9. Add the resulting executable to your path | ||
export PATH=~/vmd_install:$PATH | export PATH=~/vmd_install:$PATH | ||
<!--T:20--> | |||
If getting a blank window on a Mac, try: | If getting a blank window on a Mac, try: | ||
defaults write org.macosforge.xquartz.X11 enable_iglx -bool true | <!--T:21--> | ||
defaults write org.macosforge.xquartz.X11 enable_iglx -bool true | |||
</translate> | </translate> | ||