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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Aspera ASCP is a high speed file transfer software Homepage: http://downloads.asperasoft.com/ Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Aspera ASCP is a high speed file transfer software Homepage: http://downloads.asperasoft.com/ Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [http://vina.scripps.edu/index.html autodock_vina/1.1.2] | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: AutoDock Vina is an open-source program for doing molecular docking. Homepage: http://vina.scripps.edu/index.html<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [https://github.com/pezmaster31/bamtools bamtools/2.4.1] | | align="center" | [https://github.com/pezmaster31/bamtools bamtools/2.4.1] | ||
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| align="center" | [http://www.bioperl.org/ bioperl/1.7.1] | | align="center" | [http://www.bioperl.org/ bioperl/1.7.1] | ||
| align="center" | | | align="center" | bio | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. Homepage: http://www.bioperl.org/<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. Homepage: http://www.bioperl.org/ Keyword:bio<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [http://www.bioperl.org/ bioperl/1.7.5] | | align="center" | [http://www.bioperl.org/ bioperl/1.7.5] | ||
| align="center" | | | align="center" | bio | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. Homepage: http://www.bioperl.org/<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. Homepage: http://www.bioperl.org/ Extensions: DBD::mysql-4.050, DBD::Pg-3.8.1, Devel::CheckLib-1.13, Devel::Cycle-1.12, IO::CaptureOutput-1.1104, PadWalker-2.3, Spiffy-0.46, Test::Base-0.89, Test::Memory::Cycle-1.06, Test::RequiresInternet-0.05, Test::Weaken-3.022000, Test::YAML-1.07, XML::DOM::XPath-0.14, XML::Filter::BufferText-1.01, XML::Parser-2.44, XML::RegExp-0.04, XML::XPathEngine-0.14, YAML-1.29 Keyword:bio<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [http://blast.ncbi.nlm.nih.gov/ blast+/2.6.0] | | align="center" | [http://blast.ncbi.nlm.nih.gov/ blast+/2.6.0] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: A bioinformatics tool to PRe-process and show INformation of SEQuence data. Homepage: http://prinseq.sourceforge.net Extensions: Cairo-1.106, Contextual::Return-0.004008, Digest::MD5-2.54, ExtUtils::Depends-0.405, ExtUtils::PkgConfig-1.15, File::Spec-3.62, File::Temp-0.2304, Getopt::Long-2.48, JSON-2.90, Math::Cephes::Matrix-0.5304, Math::MatrixReal-2.12, MIME::Base64-3.15, Pod::Usage-1.68, Statistics::PCA-0.0.1, Text::SimpleTable-2.03, Want-0.26 Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: A bioinformatics tool to PRe-process and show INformation of SEQuence data. Homepage: http://prinseq.sourceforge.net Extensions: Cairo-1.106, Contextual::Return-0.004008, Digest::MD5-2.54, ExtUtils::Depends-0.405, ExtUtils::PkgConfig-1.15, File::Spec-3.62, File::Temp-0.2304, Getopt::Long-2.48, JSON-2.90, Math::Cephes::Matrix-0.5304, Math::MatrixReal-2.12, MIME::Base64-3.15, Pod::Usage-1.68, Statistics::PCA-0.0.1, Text::SimpleTable-2.03, Want-0.26 Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0<br />'''Description:''' </div> | ||
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| align="center" | [https://sourceforge.net/projects/probmask/ probmask/2011.12] | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Probmask (ZORRO) is a probabilistic alignment masking program Homepage: https://sourceforge.net/projects/probmask/<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [http://prodigal.ornl.gov/ prodigal/2.6.3] | | align="center" | [http://prodigal.ornl.gov/ prodigal/2.6.3] | ||