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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Libconfig is a simple library for processing structured configuration files Homepage: http://www.hyperrealm.com/libconfig/ Keyword:tools<br />'''Prerequisites:''' gcc/7.3.0<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Libconfig is a simple library for processing structured configuration files Homepage: http://www.hyperrealm.com/libconfig/ Keyword:tools<br />'''Prerequisites:''' gcc/7.3.0<br />'''Description:''' </div> | ||
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| align="center" | [https://directory.fsf.org/wiki/Libgeotiff libgeotiff/1.5.1] | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Library for reading and writing coordinate system information from/to GeoTIFF files Homepage: https://directory.fsf.org/wiki/Libgeotiff URL: https://directory.fsf.org/wiki/Libgeotiff<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [http://deeplearning.net/software/libgpuarray libgpuarray/0.6.9] | | align="center" | [http://deeplearning.net/software/libgpuarray libgpuarray/0.6.9] | ||
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| align="center" | chem | | align="center" | chem | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. Homepage: http://www.tddft.org/programs/octopus/wiki/index.php/Libxc Keyword:chem<br />'''Prerequisites:''' gcc/7.3.0<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. Homepage: http://www.tddft.org/programs/octopus/wiki/index.php/Libxc URL: http://www.tddft.org/programs/octopus/wiki/index.php/Libxc Keyword:chem<br />'''Prerequisites:''' gcc/7.3.0<br />'''Description:''' </div> | ||
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| align="center" | [https://github.com/hfp/libxsmm libxsmm/1.8] | | align="center" | [https://github.com/hfp/libxsmm libxsmm/1.8] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bundle which contains networkx for different Python versions Homepage: http://python.org/ Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bundle which contains networkx for different Python versions Homepage: http://python.org/ Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [https://www.nextflow.io/ nextflow/19.04.0] | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data Homepage: https://www.nextflow.io/<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [http://cibiv.github.io/NextGenMap/ nextgenmap/0.5.0] | | align="center" | [http://cibiv.github.io/NextGenMap/ nextgenmap/0.5.0] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format. Homepage: http://broadinstitute.github.io/picard/ Keyword:bio<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format. Homepage: http://broadinstitute.github.io/picard/ Keyword:bio<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [http://samtools.github.io/hts-specs) picard/2.20.6] | |||
| align="center" | bio | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format. Homepage: http://broadinstitute.github.io/picard/ URL: http://broadinstitute.github.io/picard/ Keyword:bio<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [https://github.com/broadinstitute/pilon pilon/1.22] | | align="center" | [https://github.com/broadinstitute/pilon pilon/1.22] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates - Homepage: http://trac.osgeo.org/proj/ Keyword:geo<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4 or intel/2017.1<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates - Homepage: http://trac.osgeo.org/proj/ Keyword:geo<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4 or intel/2017.1<br />'''Description:''' </div> | ||
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| align="center" | [http://trac.osgeo.org/proj/ proj/6.0.0] | |||
| align="center" | geo | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates Homepage: http://trac.osgeo.org/proj/ Keyword:geo<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [https://github.com/google/protobuf/ protobuf/3.3.0] | | align="center" | [https://github.com/google/protobuf/ protobuf/3.3.0] | ||
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| align="center" | [[Quantum ESPRESSO]] | | align="center" | [[Quantum ESPRESSO]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). Homepage: http://www.pwscf.org/ Keyword:chem CC-Wiki: Quantum ESPRESSO<br />'''Prerequisites:''' gcc/5.4.0 and openmpi/2.1.1 or intel/2016.4 and openmpi/2.1.1<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). Homepage: http://www.pwscf.org/ Keyword:chem CC-Wiki: Quantum ESPRESSO<br />'''Prerequisites:''' gcc/5.4.0 and openmpi/2.1.1 or intel/2016.4 and openmpi/2.1.1<br />'''Description:''' </div> | ||
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| align="center" | [http://www.pwscf.org/ quantumespresso/6.4.1] | |||
| align="center" | chem | |||
| align="center" | [[Quantum ESPRESSO]] | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). Homepage: http://www.pwscf.org/ URL: http://www.pwscf.org/ Keyword:chem CC-Wiki: Quantum ESPRESSO<br />'''Prerequisites:''' gcc/7.3.0 and openmpi/3.1.2<br />'''Description:''' </div> | |||
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| align="center" | [http://www.r-project.org/ r-bundle-bioconductor/3.4] | | align="center" | [http://www.r-project.org/ r-bundle-bioconductor/3.4] | ||