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modified instructions to compile latest Fenics version (2019.1.0)
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(modified instructions to compile latest Fenics version (2019.1.0)) |
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= Installation in a virtual environment = <!--T:2--> | = Installation in a virtual environment = <!--T:2--> | ||
These are instructions for installing FEniCS version | These are instructions for installing FEniCS version 2019.1.0. | ||
<!--T:21--> | <!--T:21--> | ||
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FENICS_INSTALL=${HOME}/fenics | FENICS_INSTALL=${HOME}/fenics | ||
FENICS_VERSION= | FENICS_VERSION=2019.1.0 | ||
PYBIND11_VERSION=2.2.3 | PYBIND11_VERSION=2.2.3 | ||
MODULES="hdf5-mpi/1.8.18\ | MODULES="hdf5-mpi/1.8.18\ | ||
boost\ | boost\ | ||
eigen\ | eigen\ | ||
python/3. | python/3.6\ | ||
scipy-stack/2017b\ | scipy-stack/2017b\ | ||
mpi4py/3.0.0\ | |||
petsc/3.7.5\ | petsc/3.7.5\ | ||
scotch/6.0.6\ | |||
fftw-mpi/3.3.6\ | fftw-mpi/3.3.6\ | ||
ipp/9.0.4 | ipp/9.0.4" | ||
module load $MODULES | module load $MODULES | ||
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cd $FENICS_INSTALL | cd $FENICS_INSTALL | ||
git clone --branch=$version https://bitbucket.org/fenics-project/fiat.git | git clone --branch=$version https://bitbucket.org/fenics-project/fiat.git | ||
git clone --branch=$version https://bitbucket.org/fenics-project/dijitso.git | git clone --branch=$version https://bitbucket.org/fenics-project/dijitso.git | ||
git clone --branch=$version https://bitbucket.org/fenics-project/ufl.git | git clone --branch=$version https://bitbucket.org/fenics-project/ufl.git | ||
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git clone --branch=$version https://bitbucket.org/fenics-project/mshr.git | git clone --branch=$version https://bitbucket.org/fenics-project/mshr.git | ||
git clone --branch=v$PYBIND11_VERSION \ | git clone --branch=v$PYBIND11_VERSION \ | ||
https://github.com/pybind/pybind11.git | |||
chmod u+w ~/fenics/*/.git/objects/pack/* | chmod u+w ~/fenics/*/.git/objects/pack/* | ||
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cmake -DPYBIND11_TEST=off \ | cmake -DPYBIND11_TEST=off \ | ||
-DCMAKE_INSTALL_PREFIX=$HOME/fenics \ | |||
-DPYBIND11_CPP_STANDARD=-std=c++11 .. | |||
nice make -j8 install | nice make -j8 install | ||
} | } | ||
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pip3 install numpy | pip3 install numpy | ||
cd $FENICS_INSTALL/fiat && pip3 install . | cd $FENICS_INSTALL/fiat && pip3 install . | ||
cd $FENICS_INSTALL/dijitso && pip3 install . | cd $FENICS_INSTALL/dijitso && pip3 install . | ||
cd $FENICS_INSTALL/ufl && pip3 install . | cd $FENICS_INSTALL/ufl && pip3 install . | ||
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cmake .. -DDOLFIN_SKIP_BUILD_TESTS=true \ | cmake .. -DDOLFIN_SKIP_BUILD_TESTS=true \ | ||
-DEIGEN3_INCLUDE_DIR=$EBROOTEIGEN/include \ | |||
-DCMAKE_INSTALL_PREFIX=$HOME/fenics \ | |||
-DCMAKE_SKIP_RPATH=ON \ | |||
-DRT_LIBRARY=$EBROOTNIXPKGS/lib64/librt.so \ | |||
-DHDF5_C_LIBRARY_dl=$EBROOTNIXPKGS/lib64/libdl.so \ | |||
-DHDF5_C_LIBRARY_m=$EBROOTNIXPKGS/lib64/libm.so \ | |||
-DHDF5_C_LIBRARY_pthread=$EBROOTNIXPKGS/lib64/libpthread.so \ | |||
-DHDF5_C_LIBRARY_z=$EBROOTNIXPKGS/lib/libz.so \ | |||
-DLIB_ifcore_pic=$EBROOTIFORT/lib/intel64/libifcore.so \ | |||
-DLIB_ipgo=$EBROOTIPP/lib/intel64/libipgo.a \ | |||
-DLIB_decimal=$EBROOTIPP/lib/intel64/libdecimal.a \ | |||
-DLIB_irc_s=$EBROOTIPP/lib/intel64/libirc_s.a -DSCOTCH_DIR=$EBROOTSCOTCH -DSCOTCH_LIBRARIES=$EBROOTSCOTCH/lib -DSCOTCH_INCLUDE_DIRS=$EBROOTSCOTCH/include | |||
nice make -j 8 install | nice make -j 8 install | ||
cd $FENICS_INSTALL/dolfin/python && pip3 install . | cd $FENICS_INSTALL/dolfin/python && pip3 install . | ||
} | } | ||
main | main | ||
}} | }} | ||