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| align="center" | bio | | align="center" | bio | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads Homepage: https://github.com/abyzovlab/CNVnator Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0 | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads Homepage: https://github.com/abyzovlab/CNVnator Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0<br />'''Description:''' </div> | ||
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| align="center" | [https://www.comsol.com comsol/5.3a] | | align="center" | [https://www.comsol.com comsol/5.3a] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: .NET is a free, cross-platform, open source developer platform for building many different types of applications. Homepage: https://www.microsoft.com/net/ Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: .NET is a free, cross-platform, open source developer platform for building many different types of applications. Homepage: https://www.microsoft.com/net/ Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
|- | |||
| align="center" | [https://www.microsoft.com/net/ dotnet-core/3.0.0] | |||
| align="center" | - | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: .NET is a free, cross-platform, open source developer platform for building many different types of applications. With .NET, you can use multiple languages, editors, and libraries to build for web, mobile, desktop, gaming, and IoT. Contains the SDK and the Runtime. Homepage: https://www.microsoft.com/net/ URL: https://www.microsoft.com/net/<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [https://www.perl.org/ eclipse/4.6.0] | | align="center" | [https://www.perl.org/ eclipse/4.6.0] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Intel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms. Homepage: http://software.intel.com/en-us/articles/intel-ipp/ Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Intel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms. Homepage: http://software.intel.com/en-us/articles/intel-ipp/ Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [https://ipython.org/ ipython-kernel/2.7] | |||
| align="center" | - | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: IPython kernelspec for Python 2.7 Homepage: https://ipython.org/ URL: https://ipython.org/<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
|- | |||
| align="center" | [https://ipython.org/ ipython-kernel/3.5] | |||
| align="center" | - | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: IPython kernelspec for Python 3.5 Homepage: https://ipython.org/ URL: https://ipython.org/<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
|- | |||
| align="center" | [https://ipython.org/ ipython-kernel/3.6] | |||
| align="center" | - | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: IPython kernelspec for Python 3.6 Homepage: https://ipython.org/ URL: https://ipython.org/<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
|- | |||
| align="center" | [https://ipython.org/ ipython-kernel/3.7] | |||
| align="center" | - | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: IPython kernelspec for Python 3.7 Homepage: https://ipython.org/ URL: https://ipython.org/<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
|- | |||
| align="center" | [https://ipython.org/ ipython-kernel/3.8] | |||
| align="center" | - | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: IPython kernelspec for Python 3.8 Homepage: https://ipython.org/ URL: https://ipython.org/<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [http://www.iqtree.org/ iq-tree/1.5.5] | | align="center" | [http://www.iqtree.org/ iq-tree/1.5.5] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. Homepage: http://llvm.org/ Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. Homepage: http://llvm.org/ Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [https://symas.com/lmdb lmdb/0.9.24] | |||
| align="center" | - | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases. Homepage: https://symas.com/lmdb URL: https://symas.com/lmdb<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [http://www.lstc.com/products/ls-opt ls-opt/5.2.1] | | align="center" | [http://www.lstc.com/products/ls-opt ls-opt/5.2.1] | ||
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| align="center" | tools | | align="center" | tools | ||
| align="center" | [[MATLAB]] | | align="center" | [[MATLAB]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab URL: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [http://www.mathworks.com/products/matlab matlab/2016b] | | align="center" | [http://www.mathworks.com/products/matlab matlab/2016b] | ||
| align="center" | tools | | align="center" | tools | ||
| align="center" | [[MATLAB]] | | align="center" | [[MATLAB]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab URL: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
|- | |- | ||
| align="center" | [http://www.mathworks.com/products/matlab matlab/2017a] | | align="center" | [http://www.mathworks.com/products/matlab matlab/2017a] | ||
| align="center" | tools | | align="center" | tools | ||
| align="center" | [[MATLAB]] | | align="center" | [[MATLAB]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab URL: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
|- | |- | ||
| align="center" | [http://www.mathworks.com/products/matlab matlab/2018a] | | align="center" | [http://www.mathworks.com/products/matlab matlab/2018a] | ||
| align="center" | tools | | align="center" | tools | ||
| align="center" | [[MATLAB]] | | align="center" | [[MATLAB]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab URL: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
|- | |- | ||
| align="center" | [http://www.mathworks.com/products/matlab matlab/2018b] | | align="center" | [http://www.mathworks.com/products/matlab matlab/2018b] | ||
| align="center" | tools | | align="center" | tools | ||
| align="center" | [[MATLAB]] | | align="center" | [[MATLAB]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab URL: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
|- | |- | ||
| align="center" | [http://www.mathworks.com/products/matlab matlab/2019a] | | align="center" | [http://www.mathworks.com/products/matlab matlab/2019a] | ||
| align="center" | tools | | align="center" | tools | ||
| align="center" | [[MATLAB]] | | align="center" | [[MATLAB]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. Homepage: http://www.mathworks.com/products/matlab URL: http://www.mathworks.com/products/matlab Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [http://maven.apache.org/index.html maven/3.5.0] | | align="center" | [http://maven.apache.org/index.html maven/3.5.0] | ||
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| align="center" | [[Python]] | | align="center" | [[Python]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Python is a programming language that lets you work more quickly and integrate your systems more effectively. Homepage: http://python.org/ Extensions: gnureadline-8.0.0, pip-19.1.1, setuptools-41.0.1, virtualenv-16.6.2, wheel-0.33.4 Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Python is a programming language that lets you work more quickly and integrate your systems more effectively. Homepage: http://python.org/ Extensions: gnureadline-8.0.0, pip-19.1.1, setuptools-41.0.1, virtualenv-16.6.2, wheel-0.33.4 Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
|- | |||
| align="center" | [http://python.org/ python/3.8.0] | |||
| align="center" | tools | |||
| align="center" | [[Python]] | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Python is a programming language that lets you work more quickly and integrate your systems more effectively. Homepage: http://python.org/ URL: http://python.org/ Extensions: gnureadline-8.0.0, pip-19.3.1, setuptools-41.6.0, virtualenv-16.7.7, wheel-0.33.6 Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
|- | |- | ||
| align="center" | [https://bitbucket.org/mpi4py/mpi4py python27-mpi4py/2.0.0] | | align="center" | [https://bitbucket.org/mpi4py/mpi4py python27-mpi4py/2.0.0] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bundle which contains a collection of popular RubyGems, including ffi, childprocess, json, cabin, backports, arr-pm, clamp, multipart-post, faraday, faraday_middleware, highline, net-http-pipeline, net-http-persistent, multi_json, public_suffix, addressable, gh, launchy, ethon, typhoeus, websocket, pusher-client, diff-lcs, rspec-support, rspec-mocks, rspec-expections, rspec-core, rspec, rack, rack-protection, tilt, sinatra, rack-test, bundler. Homepage: https://rubygems.org Extensions: addressable-2.4.0, arr-pm-0.0.10, backports-3.6.8, bundler-1.15.4, cabin-0.9.0, childprocess-0.5.9, clamp-1.1.1, diff-lcs-1.2.5, ethon-0.10.1, faraday-0.10.0, faraday_middleware-0.10.1, ffi-1.9.14, gh-0.15.0, highline-1.7.8, json-2.0.2, launchy-2.4.3, multi_json-1.12.1, multipart-post-2.0.0, net-http-persistent-2.9.4, net-http-pipeline-1.0.1, public_suffix-2.0.4, pusher-client-0.6.2, rack-1.6.5, rack-protection-1.5.3, rack-test-0.6.3, rspec-3.5.0, rspec-core-3.5.4, rspec-expectations-3.5.0, rspec-mocks-3.5.0, rspec-support-3.5.0, sinatra-1.4.7, tilt-2.0.5, typhoeus-0.6.9, websocket-1.2.3 Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bundle which contains a collection of popular RubyGems, including ffi, childprocess, json, cabin, backports, arr-pm, clamp, multipart-post, faraday, faraday_middleware, highline, net-http-pipeline, net-http-persistent, multi_json, public_suffix, addressable, gh, launchy, ethon, typhoeus, websocket, pusher-client, diff-lcs, rspec-support, rspec-mocks, rspec-expections, rspec-core, rspec, rack, rack-protection, tilt, sinatra, rack-test, bundler. Homepage: https://rubygems.org Extensions: addressable-2.4.0, arr-pm-0.0.10, backports-3.6.8, bundler-1.15.4, cabin-0.9.0, childprocess-0.5.9, clamp-1.1.1, diff-lcs-1.2.5, ethon-0.10.1, faraday-0.10.0, faraday_middleware-0.10.1, ffi-1.9.14, gh-0.15.0, highline-1.7.8, json-2.0.2, launchy-2.4.3, multi_json-1.12.1, multipart-post-2.0.0, net-http-persistent-2.9.4, net-http-pipeline-1.0.1, public_suffix-2.0.4, pusher-client-0.6.2, rack-1.6.5, rack-protection-1.5.3, rack-test-0.6.3, rspec-3.5.0, rspec-core-3.5.4, rspec-expectations-3.5.0, rspec-mocks-3.5.0, rspec-support-3.5.0, sinatra-1.4.7, tilt-2.0.5, typhoeus-0.6.9, websocket-1.2.3 Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
|- | |||
| align="center" | [https://www.rust-lang.org rust/1.28.0] | |||
| align="center" | tools | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. Homepage: https://www.rust-lang.org URL: https://www.rust-lang.org Keyword:tools<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
|- | |- | ||
| align="center" | [https://github.com/COMBINE-lab/salmon salmon/0.11.3] | | align="center" | [https://github.com/COMBINE-lab/salmon salmon/0.11.3] | ||
| Line 2,394: | Line 2,439: | ||
| align="center" | [[Python]] | | align="center" | [[Python]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bundle which contains the Scientific Python stack, including Cycler, mpmath, numpy, scipy, sympy, pandas, matplotlib, ipython_genutils, traitlets, ptyprocess, pathlib2, pickleshare, pexpect, simplegeneric, ipython, ipykernel, jupyter_client, jupyter_core, pyzmq, tornado, futures and ipyparallel. Homepage: http://python.org/ Keyword:math<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bundle which contains the Scientific Python stack, including Cycler, mpmath, numpy, scipy, sympy, pandas, matplotlib, ipython_genutils, traitlets, ptyprocess, pathlib2, pickleshare, pexpect, simplegeneric, ipython, ipykernel, jupyter_client, jupyter_core, pyzmq, tornado, futures and ipyparallel. Homepage: http://python.org/ Keyword:math<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
|- | |||
| align="center" | [http://python.org/ scipy-stack/2019b] | |||
| align="center" | math | |||
| align="center" | [[Python]] | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Bundle which contains the Scientific Python stack, including Cycler, mpmath, numpy, scipy, sympy, pandas, matplotlib, ipython_genutils, traitlets, ptyprocess, pathlib2, pickleshare, pexpect, simplegeneric, ipython, ipykernel, jupyter_client, jupyter_core, pyzmq, tornado, futures and ipyparallel. Homepage: http://python.org/ URL: http://python.org/ Keyword:math<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [http://gforge.inria.fr/projects/scotch/ scotch/6.0.4] | | align="center" | [http://gforge.inria.fr/projects/scotch/ scotch/6.0.4] | ||