42,787
edits
Modules avx: Difference between revisions
Jump to navigation
Jump to search
no edit summary
No edit summary |
No edit summary |
||
| Line 294: | Line 294: | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). Canu is a hierarchical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected sequences Homepage: https://github.com/marbl/canu Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). Canu is a hierarchical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected sequences Homepage: https://github.com/marbl/canu Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0<br />'''Description:''' </div> | ||
|- | |||
| align="center" | [https://github.com/marbl/canu canu/1.9] | |||
| align="center" | bio | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). Canu is a hierarchical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence consensus Trim corrected sequences Assemble trimmed corrected sequences Homepage: https://github.com/marbl/canu URL: https://github.com/marbl/canu Keyword:bio<br />'''Prerequisites:''' gcc/7.3.0<br />'''Description:''' </div> | |||
|- | |- | ||
| align="center" | [https://github.com/Illumina/canvas canvas/1.25] | | align="center" | [https://github.com/Illumina/canvas canvas/1.25] | ||
| Line 1,124: | Line 1,129: | ||
| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines different protein signature recognition methods into one resource. Homepage: http://www.ebi.ac.uk/interpro/ Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines different protein signature recognition methods into one resource. Homepage: http://www.ebi.ac.uk/interpro/ Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4<br />'''Description:''' </div> | ||
|- | |||
| align="center" | [http://www.ebi.ac.uk/interpro/ interproscan/5.40-77.0] | |||
| align="center" | bio | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines different protein signature recognition methods into one resource. Homepage: http://www.ebi.ac.uk/interpro/ URL: http://www.ebi.ac.uk/interpro/ Keyword:bio<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
|- | |- | ||
| align="center" | [http://software.intel.com/en-us/articles/intel-ipp/ ipp/2017.1.132] | | align="center" | [http://software.intel.com/en-us/articles/intel-ipp/ ipp/2017.1.132] | ||