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Fix R foreach script to use cpus-per-task on 1 node
m (Update R version to 3.6.0) |
(Fix R foreach script to use cpus-per-task on 1 node) |
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| Line 301: | Line 301: | ||
<!--T:52--> | <!--T:52--> | ||
# Use the environment variable | # Use the environment variable SLURM_CPUS_PER_TASK to set the number of cores. | ||
# This is for SLURM. Replace | # This is for SLURM. Replace SLURM_CPUS_PER_TASK by the proper variable for your system. | ||
# Avoid manually setting a number of cores. | # Avoid manually setting a number of cores. | ||
ncores = Sys.getenv(" | ncores = Sys.getenv("SLURM_CPUS_PER_TASK") | ||
<!--T:53--> | <!--T:53--> | ||
| Line 326: | Line 326: | ||
#!/bin/bash | #!/bin/bash | ||
#SBATCH --account=def-someacct # replace this with your own account | #SBATCH --account=def-someacct # replace this with your own account | ||
#SBATCH -- | #SBATCH --nodes=1 # number of node MUST be 1 | ||
#SBATCH --cpus-per-task=4 # number of processes | |||
#SBATCH --mem-per-cpu=2048M # memory; default unit is megabytes | #SBATCH --mem-per-cpu=2048M # memory; default unit is megabytes | ||
#SBATCH --time=0-00:15 # time (DD-HH:MM) | #SBATCH --time=0-00:15 # time (DD-HH:MM) | ||