Translations:Biomolecular simulation/13/en

• MDAnalysis is an object-oriented Python library to analyze trajectories from molecular dynamics (MD) simulations in many popular formats.
• MDTraj can also read, write and analyze MD trajectories with only a few lines of Python code with wide MD format support.
• Biopython is a set of freely available tools for biological computation.
• foyer is a package for atom-typing as well as applying and disseminating force fields.
• mBuild is a hierarchical, component based molecule builder.
• mdsynthesis is a persistence engine for molecular dynamics data.
• nglview: NGL Viewer is a collection of tools for web-based molecular graphics.
• ParmEd is a general tool for aiding in investigations of biomolecular systems using popular molecular simulation packages.
• PyRETIS is a Python library for rare event molecular simulations with emphasis on methods based on transition interface sampling and replica exchange transition interface sampling.