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QIIME/fr: Difference between revisions
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apptainer exec -B $PWD:/home -B /scratch/someuser:/outputs \ | apptainer exec -B $PWD:/home -B /scratch/someuser:/outputs \ | ||
-B / | -B /project/def-somePI/someuser/path/to/inputs:/inputs qiime2-2021.11.sif \ | ||
qiime tools import --type 'FeatureData[Sequence]' \ | qiime tools import --type 'FeatureData[Sequence]' \ | ||
--input-path /inputs/some_fastafile.fa \ | --input-path /inputs/some_fastafile.fa \ | ||
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apptainer exec -B $PWD:/home -B /scratch/someuser:/outputs \ | apptainer exec -B $PWD:/home -B /scratch/someuser:/outputs \ | ||
-B / | -B /project/def-somePI/someuser/path/to/inputs:/inputs qiime2-2021.11.sif \ | ||
qiime tools import \ | qiime tools import \ | ||
--type 'FeatureData[Taxonomy]' \ | --type 'FeatureData[Taxonomy]' \ | ||
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apptainer exec -B $PWD:/home -B /scratch/someuser:/outputs \ | apptainer exec -B $PWD:/home -B /scratch/someuser:/outputs \ | ||
-B / | -B /project/def-somePI/someuser/path/to/inputs:/inputs qiime2-2021.11.sif \ | ||
qiime feature-classifier fit-classifier-naive-bayes \ | qiime feature-classifier fit-classifier-naive-bayes \ | ||
--i-reference-reads /outputs/some_output_feature.qza \ | --i-reference-reads /outputs/some_output_feature.qza \ | ||