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BUSCO/fr: Difference between revisions
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{{Command|avail_wheel busco}} | {{Command|avail_wheel busco}} | ||
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== Wheel Python == | == Wheel Python == | ||
=== Installation === | === Installation === | ||
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{{Commands | {{Commands | ||
|module load StdEnv/2020 gcc python/3.10 augustus hmmer blast+ metaeuk prodigal r bbmap}} | |module load StdEnv/2020 gcc python/3.10 augustus hmmer blast+ metaeuk prodigal r bbmap}} | ||
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<b>2.</b> Créez l'environnement virtuel. | <b>2.</b> Créez l'environnement virtuel. | ||
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}} | }} | ||
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<b>3.</b> Installez le wheel et ses dépendances. | <b>3.</b> Installez le wheel et ses dépendances. | ||
{{Command | {{Command | ||
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|pip install biopython pandas busco --no-index | |pip install biopython pandas busco --no-index | ||
}} | }} | ||
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<b>4.</b> Validez l'installation. | <b>4.</b> Validez l'installation. | ||
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# Load modules dependencies. | # Load modules dependencies. | ||
module load StdEnv/2020 gcc python augustus hmmer blast+ metaeuk prodigal r bbmap | module load StdEnv/2020 gcc/9.3.0 python/3.10 augustus/3.5.0 hmmer/3.3.2 blast+/2.13.0 metaeuk/6 prodigal/2.6.3 r/4.3.1 bbmap/38.86 | ||
# Generate your virtual environment in $SLURM_TMPDIR. | # Generate your virtual environment in $SLURM_TMPDIR. | ||