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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. Homepage: https://developer.nvidia.com/cudnn Keyword:math<br />'''Prerequisites:''' gcc/7.3.0 and cuda/10.0.130<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. Homepage: https://developer.nvidia.com/cudnn Keyword:math<br />'''Prerequisites:''' gcc/7.3.0 and cuda/10.0.130<br />'''Description:''' </div> | ||
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| align="center" | [https://developer.nvidia.com/cudnn cudnn/7.6.5] | |||
| align="center" | math | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. Homepage: https://developer.nvidia.com/cudnn URL: https://developer.nvidia.com/cudnn Keyword:math<br />'''Prerequisites:''' cudacore/.10.1.243<br />'''Description:''' </div> | |||
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| align="center" | [http://cole-trapnell-lab.github.io/cufflinks/ cufflinks/2.2.1] | | align="center" | [http://cole-trapnell-lab.github.io/cufflinks/ cufflinks/2.2.1] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. Homepage: http://www.fftw.org Keyword:math<br />'''Prerequisites:''' gcc/4.8.5 or gcc/5.4.0 or intel/2016.4 or intel/2017.1<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. Homepage: http://www.fftw.org Keyword:math<br />'''Prerequisites:''' gcc/4.8.5 or gcc/5.4.0 or intel/2016.4 or intel/2017.1<br />'''Description:''' </div> | ||
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| align="center" | [http://www.fftw.org fftw/3.3.8] | |||
| align="center" | math | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. Homepage: http://www.fftw.org URL: http://www.fftw.org Keyword:math<br />'''Prerequisites:''' gcc/7.3.0 or intel/2018.3<br />'''Description:''' </div> | |||
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| align="center" | [https://github.com/rrwick/Filtlong filtlong/0.2.0] | | align="center" | [https://github.com/rrwick/Filtlong filtlong/0.2.0] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections. Homepage: http://www.hdfgroup.org/HDF5/ Keyword:io<br />'''Prerequisites:''' gcc/5.4.0 and openmpi/2.0.2 or gcc/5.4.0 and openmpi/2.1.1 or gcc/6.4.0 and openmpi/2.1.1 or intel/2016.4 and cuda/8.0.44 and openmpi/2.1.1 or intel/2016.4 and openmpi/2.0.2 or intel/2016.4 and openmpi/2.1.1 or intel/2017.1 and openmpi/2.0.2 or intel/2017.1 and openmpi/2.1.1<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections. Homepage: http://www.hdfgroup.org/HDF5/ Keyword:io<br />'''Prerequisites:''' gcc/5.4.0 and openmpi/2.0.2 or gcc/5.4.0 and openmpi/2.1.1 or gcc/6.4.0 and openmpi/2.1.1 or intel/2016.4 and cuda/8.0.44 and openmpi/2.1.1 or intel/2016.4 and openmpi/2.0.2 or intel/2016.4 and openmpi/2.1.1 or intel/2017.1 and openmpi/2.0.2 or intel/2017.1 and openmpi/2.1.1<br />'''Description:''' </div> | ||
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| align="center" | [http://portal.hdfgroup.org/display/support hdf5/1.10.3] | |||
| align="center" | io | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. Homepage: http://portal.hdfgroup.org/display/support URL: http://portal.hdfgroup.org/display/support Keyword:io<br />'''Prerequisites:''' gcc/7.3.0 or intel/2018.3<br />'''Description:''' </div> | |||
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| align="center" | [http://www.hdfgroup.org/HDF5/ hdf5/1.8.18] | | align="center" | [http://www.hdfgroup.org/HDF5/ hdf5/1.8.18] | ||
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| align="center" | math | | align="center" | math | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems. Homepage: http://icl.cs.utk.edu/magma/ Keyword:math<br />'''Prerequisites:''' gcc/7.3.0 and cuda/10.0.130<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems. Homepage: http://icl.cs.utk.edu/magma/ URL: http://icl.cs.utk.edu/magma/ Keyword:math<br />'''Prerequisites:''' gcc/7.3.0 and cuda/10.0.130 or intel/2018.3 and cuda/10.1<br />'''Description:''' </div> | ||
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| align="center" | [http://www.gnu.org/software/make/make.html make/3.82] | | align="center" | [http://www.gnu.org/software/make/make.html make/3.82] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Homepage: http://www.ks.uiuc.edu/Research/namd/ Keyword:chem<br />'''Prerequisites:''' intel/2016.4 or intel/2016.4 and cuda/8.0.44<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Homepage: http://www.ks.uiuc.edu/Research/namd/ Keyword:chem<br />'''Prerequisites:''' intel/2016.4 or intel/2016.4 and cuda/8.0.44<br />'''Description:''' </div> | ||
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| align="center" | [http://www.ks.uiuc.edu/Research/namd/ namd-multicore/2.13] | |||
| align="center" | chem | |||
| align="center" | [[NAMD]] | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Homepage: http://www.ks.uiuc.edu/Research/namd/ URL: http://www.ks.uiuc.edu/Research/namd/ Keyword:chem<br />'''Prerequisites:''' intel/2018.3 and cuda/10.1<br />'''Description:''' </div> | |||
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| align="center" | [http://www.ks.uiuc.edu/Research/namd/ namd-verbs-smp/2.12] | | align="center" | [http://www.ks.uiuc.edu/Research/namd/ namd-verbs-smp/2.12] | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. - Homepage: http://www.unidata.ucar.edu/software/netcdf/ Keyword:io<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4 or intel/2017.1<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. - Homepage: http://www.unidata.ucar.edu/software/netcdf/ Keyword:io<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4 or intel/2017.1<br />'''Description:''' </div> | ||
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| align="center" | [http://www.unidata.ucar.edu/software/netcdf/ netcdf/4.6.1] | |||
| align="center" | io | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. Homepage: http://www.unidata.ucar.edu/software/netcdf/ URL: http://www.unidata.ucar.edu/software/netcdf/ Keyword:io<br />'''Prerequisites:''' gcc/7.3.0 or intel/2018.3<br />'''Description:''' </div> | |||
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| align="center" | [http://www.lysator.liu.se/~nisse/nettle/ nettle/3.3] | | align="center" | [http://www.lysator.liu.se/~nisse/nettle/ nettle/3.3] | ||
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| align="center" | mpi | | align="center" | mpi | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Open MPI Project is an open source MPI-3 implementation. Homepage: http://www.open-mpi.org/ URL: http://www.open-mpi.org/ Keyword:mpi<br />'''Prerequisites:''' gcc/7.3.0 or gcc/7.3.0 and cuda/10.0.130 or intel/2018.3 or intel/2018.3 and cuda/10.0.130<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Open MPI Project is an open source MPI-3 implementation. Homepage: http://www.open-mpi.org/ URL: http://www.open-mpi.org/ Keyword:mpi<br />'''Prerequisites:''' gcc/7.3.0 or gcc/7.3.0 and cuda/10.0.130 or gcc/7.3.0 and cuda/10.1 or intel/2018.3 or intel/2018.3 and cuda/10.0.130 or intel/2018.3 and cuda/10.1 or pgi/19.4 and cuda/10.1<br />'''Description:''' </div> | ||
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| align="center" | [http://www.open-mpi.org/ openmpi/4.0.1] | | align="center" | [http://www.open-mpi.org/ openmpi/4.0.1] | ||