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QIIME/fr: Difference between revisions
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--output-path /outputs/some_output_ref-taxonomy.qza | --output-path /outputs/some_output_ref-taxonomy.qza | ||
singularity exec -B $PWD:/home -B /scratch/someuser:/outputs \ | |||
singularity exec -B /home -B / | -B /projects/someuser/path/to/inputs:/inputs qiime2-2019.10.sif \ | ||
qiime feature-classifier fit-classifier-naive-bayes \ | qiime feature-classifier fit-classifier-naive-bayes \ | ||
--i-reference-reads / | --i-reference-reads /outputs/some_output_feature.qza \ | ||
--i-reference-taxonomy / | --i-reference-taxonomy /outputs/some_output_ref-taxonomy.qza \ | ||
--o-classifier / | --o-classifier /outputs/some_output_classifier.qza | ||
</pre> | </pre> | ||
Note that it is important to [[Singularity#Bind_mounts|bind]] the folders you want to work with to the execution of the container. For more information about Singularity, you can watch the recorded [https://www.youtube.com/watch?v=kYb0aXS5DEE Singularity webinar]. | Note that it is important to [[Singularity#Bind_mounts|bind]] the folders you want to work with to the execution of the container. For more information about Singularity, you can watch the recorded [https://www.youtube.com/watch?v=kYb0aXS5DEE Singularity webinar]. | ||